o Rŀg@s.dZddlmZddlmZGdddZdS)zGraphSet module. Provides: - GraphSet - container for GraphData objects For drawing capabilities, this module uses reportlab to draw and write the diagram: http://www.reportlab.com )colors) GraphDatac @seZdZdZdddZddejejdddddf ddZd d Z d d Z d dZ ddZ ddZ dddZddZddZddZdS)GraphSetz{Graph Set. Attributes: - id Unique identifier for the set - name String describing the set NcCst|_d|_i|_||_dS)zhInitialize. Arguments: - name String identifying the graph set sensibly rN)id_next_id_graphsname)selfr r X/var/www/html/myenv/lib/python3.10/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py__init__*s zGraphSet.__init__barrc Cs`|dur|}| dur | }| dur| }|j} t| ||||||} || _| |j| <|jd7_| S)aAdd a GraphData object to the diagram. Arguments: - data List of (position, value) int tuples - name String, description of the graph - style String ('bar', 'heat', 'line') describing how the graph will be drawn - color colors.Color describing the color to draw all or 'high' (some styles) data (overridden by backwards compatible argument with UK spelling, colour). - altcolor colors.Color describing the color to draw 'low' (some styles) data (overridden by backwards compatible argument with UK spelling, colour). - linewidth Float describing linewidth for graph - center Float setting the value at which the x-axis crosses the y-axis (overridden by backwards compatible argument with UK spelling, centre) Add a GraphData object to the diagram (will be stored internally). Nr)rr linewidthr) r datar stylecoloraltcolorrcentercolour altcolourcentrergraphr r r new_graph6s" zGraphSet.new_graphcCs |j|=dS)z1Remove a graph from the set, indicated by its id.Nr)r graph_idr r r del_graphfs zGraphSet.del_graphcsfddtjDS)zsReturn list of all graphs in the graph set, sorted by id. Sorting is to ensure reliable stacking. csg|]}j|qSr r).0rr r r osz'GraphSet.get_graphs..)sortedrrr rr get_graphsjszGraphSet.get_graphscCst|jS)z+Return a list of all ids for the graph set.)listrkeysrr r r get_idsqszGraphSet.get_idscCsJgg}}|jD]}|\}}||||q t|t|fS)z@Return the lowest and highest base (or mark) numbers as a tuple.)rvaluesrangeappendminmax)r lowshighsrlowhighr r r r&us    zGraphSet.rangecCshg}|jD] }|t|j7}q|t|}|d||d||d|d|d|dfS)zEReturn (minimum, lowerQ, medianQ, upperQ, maximum) values as a tuple.r)rr%r"rsortlen)r rrdatalenr r r data_quartiles~s  zGraphSet.data_quartilesrcCs^|s|Sd|jd|jdg}|dt|j|jD] }||j|qd|S)zReturn a formatted string with information about the set. Arguments: - verbose - Flag indicating whether a short or complete account of the set is required  <: > %d graphs  __class__r r'r3rjoin)r verboseoutstrkeyr r r to_strings  zGraphSet.to_stringcCs t|jS)z'Return the number of graphs in the set.)r3rrr r r __len__ zGraphSet.__len__cCs |j|S)zReturn a graph, keyed by id.r)r r@r r r __getitem__rCzGraphSet.__getitem__cCs:d|jd|jdg}|dt|jd|}|S)zAReturn a formatted string with information about the feature set.r6r7r8r9r:r;)r r?r r r __str__s zGraphSet.__str__)N)r)__name__ __module__ __qualname____doc__r r lightgreen darkseagreenrrr!r$r&r5rArBrDrEr r r r r!s,  0  rN)rI reportlab.libr_Graphrrr r r r s