o Rŀg@s6dZGdddZGdddeZGdddeZdS)z=Class that maps (chain_id, residue_id) to a residue property.c@sHeZdZdZddZddZddZdd Zd d Zd d Z ddZ dS)AbstractPropertyMapz4Define base class, map holder of residue properties.cCs||_||_||_dSzInitialize the class.N) property_dict property_keys property_listselfrrrrO/var/www/html/myenv/lib/python3.10/site-packages/Bio/PDB/AbstractPropertyMap.py__init__s zAbstractPropertyMap.__init__cCs|S)z#Return entity identifier (PRIVATE).r)r entity_idrrr _translate_idsz!AbstractPropertyMap._translate_idcCs||}||jvS)a|Check if the mapping has a property for this residue. :param chain_id: chain id :type chain_id: char :param res_id: residue id :type res_id: char Examples -------- This is an incomplete but illustrative example:: if (chain_id, res_id) in apmap: res, prop = apmap[(chain_id, res_id)] r r)rid translated_idrrr __contains__s  z AbstractPropertyMap.__contains__cCs||}|j|S)a Return property for a residue. :param chain_id: chain id :type chain_id: char :param res_id: residue id :type res_id: int or (char, int, char) :return: some residue property :rtype: anything (can be a tuple) r )rkeyrrrr __getitem__,s zAbstractPropertyMap.__getitem__cCs t|jS)zReturn number of residues for which the property is available. :return: number of residues :rtype: int )lenrrrrr __len__;s zAbstractPropertyMap.__len__cCs|jS)zReturn the list of residues. :return: list of residues for which the property was calculated :rtype: [(chain_id, res_id), (chain_id, res_id),...] )rrrrr keysCszAbstractPropertyMap.keysccs&tt|jD]}|j|VqdS)aIterate over the (entity, property) list. Handy alternative to the dictionary-like access. :return: iterator Examples -------- >>> entity_property_list = [ ... ('entity_1', 'property_1'), ... ('entity_2', 'property_2') ... ] >>> map = AbstractPropertyMap({}, [], entity_property_list) >>> for (res, property) in iter(map): ... print(res, property) entity_1 property_1 entity_2 property_2 N)rangerr)rirrr __iter__KszAbstractPropertyMap.__iter__N) __name__ __module__ __qualname____doc__r r rrrrrrrrr r s rc@ eZdZdZddZddZdS)AbstractResiduePropertyMapz(Define class for residue properties map.cCt||||dSrrr rrrr r fz#AbstractResiduePropertyMap.__init__cCs$|\}}t|tr|d|dff}|S)z.Return entity identifier on residue (PRIVATE). ) isinstanceint)rent_idchain_idres_idrrr r js z(AbstractResiduePropertyMap._translate_idNrrrrr r rrrr rc rc@r)AbstractAtomPropertyMapz%Define class for atom properties map.cCr rr!rrrr r ur"z AbstractAtomPropertyMap.__init__cCsHt|dkr |\}}}}n|\}}}d}t|tr"|d|df||f}|S)z,Return entity identifier on atoms (PRIVATE).Nr#)rr$r%)rr&r'r( atom_nameicoderrr r ys   z%AbstractAtomPropertyMap._translate_idNr)rrrr r+rr*r+N)rrrr+rrrr sX