o Rŀg6 @s\dZddlmZddlmZddlmZer"ddlmZddl m Z Gddded Z d S) z'Model class, used in Structure objects.) TYPE_CHECKING)Entity)IC_Chain)Chain) Structurec@sbeZdZdZdddZddZddZd d Zd d Zdde ddfddZ dde ddfddZ dS)ModelzThe object representing a model in a structure. In a structure derived from an X-ray crystallography experiment, only a single model will be present (with some exceptions). NMR structures normally contain many different models. NcCs,d|_|dur ||_n||_t||dS)zYInitialize. Arguments: - id - int - serial_num - int MN)level serial_numr__init__)selfidr rA/var/www/html/myenv/lib/python3.10/site-packages/Bio/PDB/Model.pyr s zModel.__init__cCsd|dS)zReturn model identifier.z )get_idr rrr__repr__*szModel.__repr__ccs|EdHdS)zReturn chains.Nrrrrr get_chains.szModel.get_chainscc|D]}|EdHqdS)zReturn residues.N)r)r crrr get_residues2  zModel.get_residuesccr)z Return atoms.N)r)r rrrr get_atoms7rzModel.get_atomsFverbosereturncC|D]}||qdS)zCreate/update internal coordinates from Atom X,Y,Z coordinates. Internal coordinates are bond length, angle and dihedral angles. :param verbose bool: default False describe runtime problems N)ratom_to_internal_coordinatesr rchnrrrr<  z"Model.atom_to_internal_coordinatescCr)zCreate/update atom coordinates from internal coordinates. :param verbose bool: default False describe runtime problems :raises Exception: if any chain does not have .pic attribute N)rinternal_to_atom_coordinatesrrrrr"Gr!z"Model.internal_to_atom_coordinates)N)F) __name__ __module__ __qualname____doc__r rrrrboolrr"rrrrrs  r)rrN) r&typingrBio.PDB.EntityrBio.PDB.internal_coordsr Bio.PDB.ChainrBio.PDB.Structurerrrrrrs