o Rŀg @s2dZddlZedZedZGdddZdS)z.A collection of residues from a PDB structure.Nz^(\w\w\w\w)(?:$|\s+|_)(.*)z \(?(\w:)?(-?\w*)-?(-?\w*)\)?(.*)c@s*eZdZdZd ddZddZddZdS) ResiduesaA collection of residues from a PDB structure. This class provides code to work with SCOP domain definitions. These are concisely expressed as one or more chain fragments. For example, "(1bba A:10-20,B:)" indicates residue 10 through 20 (inclusive) of chain A, and every residue of chain B in the pdb structure 1bba. The pdb id and brackets are optional. In addition "-" indicates every residue of a pbd structure with one unnamed chain. Start and end residue ids consist of the residue sequence number and an optional single letter insertion code. e.g. "12", "-1", "1a", "1000" pdbid -- An optional PDB id, e.g. "1bba" fragments -- A sequence of tuples (chainID, startResID, endResID) NcCs&d|_d|_|dur||dSdS)zInitialize the class.N)pdbid fragments_parse)selfstrrrE/var/www/html/myenv/lib/python3.10/site-packages/Bio/SCOP/Residues.py__init__#s zResidues.__init__c Cs|}t|}|dur|d|_|d}|dks$|dks$|dkr&dSg}|dD]E}t|}|dur?td||\}}}}|dkrRtd||rh|dd kratd ||dd}nd}| |||fq-t ||_ dS) Nr-z(-),z!I don't understand the format of :z I don't understand the chain in ) strip _pdbid_rematchgrouprsplit _fragment_re ValueErrorgroupsappendtupler) rr mrfragmentchainstartendpostfixrrr r*s,     zResidues._parsecCsd}|jr |jd}|js|dSg}|jD]%\}}}g}|r'||d|r3||d||d|q|d|S)z/Represent the SCOP residues record as a string.r rrr)rrrjoin)rprefixstrsrrr srrr __str__Js zResidues.__str__)N)__name__ __module__ __qualname____doc__r rr'rrrr rs   r)r+recompilerrrrrrr s