o
    RÅ€go	  ã                   @   s   d Z ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlm	Z	 dd	l
mZ dd
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mZ ddl
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mZ ddl
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mZ ddl
mZ ddl
mZ ddl
mZ ddl
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mZ dZdS )zÓSequencing related command line application wrappers (OBSOLETE).

We have decided to remove this module in future, and instead recommend
building your command and invoking it via the subprocess module directly.
é   )ÚBwaAlignCommandline)ÚBwaBwaswCommandline)ÚBwaIndexCommandline)ÚBwaMemCommandline)ÚBwaSampeCommandline)ÚBwaSamseCommandline)ÚNovoalignCommandline)ÚSamtoolsCalmdCommandline)ÚSamtoolsCatCommandline)ÚSamtoolsFaidxCommandline)ÚSamtoolsFixmateCommandline)ÚSamtoolsIdxstatsCommandline)ÚSamtoolsIndexCommandline)ÚSamtoolsMergeCommandline)ÚSamtoolsMpileupCommandline)ÚSamtoolsPhaseCommandline)ÚSamtoolsReheaderCommandline)ÚSamtoolsRmdupCommandline)ÚSamtoolsTargetcutCommandline)Ú SamtoolsVersion0xSortCommandline)Ú SamtoolsVersion1xSortCommandline)ÚSamtoolsViewCommandline)r   r   r   r   r   r   r   r   r	   r
   r   r   r   r   r   r   r   r   r   ÚSamtoolsSortCommandliner   r   r   N)Ú__doc__Ú_bwar   r   r   r   r   r   Ú
_Novoalignr   Ú	_samtoolsr	   r
   r   r   r   r   r   r   r   r   r   r   r   r   r   r   Ú__all__© r   r   úX/var/www/html/myenv/lib/python3.10/site-packages/Bio/Sequencing/Applications/__init__.pyÚ<module>   s2   